PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_25E162197.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 357aa    MW: 39605.3 Da    PI: 6.6277
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_25E162197.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind77.62.2e-2416627101
                            EEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
           HSF_DNA-bind  27 sfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                            sfvv+++ efa ++Lp yFkhsnf+SF+RQLn+YgF+k++ e+         weF +++F kg+k+ll++i r+k
  Traes_6BS_25E162197.1   1 SFVVWNSPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPER---------WEFGNEYFVKGQKHLLKNIYRRK 66 
                            6***************************************999.........*********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-24165IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-27165IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.35E-21165IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.2E-21165IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-91426IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043401539IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-92739IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
SFVVWNSPEF AARLLPAYFK HSNFSSFIRQ LNTYGFRKID PERWEFGNEY FVKGQKHLLK  60
NIYRRKPIHS HSHQPGALPD NERSFFEDEI DRLAREKANL QAELWKSKQQ ESGTMFQIEA  120
LERRAVDMEQ RQGKMIAFLQ QASKNPHFVG KLVKMAEASS MFADALHKKR RLSGLDYAVE  180
ATETASFCDD HSPTSRQETG NLLNQHFSDK LKLGLCSAAA ESNLVTLSTQ SSHEDNCSPH  240
GRHPPGHEGM GTGRLPLVPQ MMELSDTGTS ICPSKSSFFT PAVNDEGLSP CHLSLTLASC  300
SMDVDRGQAS NADGSTTVDE GSDNPPEATT AAMGVNQKAS VDAGTAEALR PREDMRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-1316554129Heat shock factor protein 1
5d5v_B2e-1316554129Heat shock factor protein 1
5d5v_D2e-1316554129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3555640.0AK355564.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1022K17.
GenBankAK3575040.0AK357504.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1055A05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574986.10.0PREDICTED: heat stress transcription factor A-5
SwissprotQ6K6S50.0HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLW5GPM90.0W5GPM9_WHEAT; Uncharacterized protein
STRINGMLOC_50620.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.18e-84HSF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]